Available reference sets | The module and protein weighting table | Why a protein can be in several modules | Module term labels | The prediction model | The anonymized biomarker reference | Simulated example data | Provenance and use | Adding a reference set

What a Weighted Sum Score is | Proteomic data and what calculate_WSS() expects | Two ways to prepare a matrix | Calculating scores with the bundled reference set | Using your own module table | Missing proteins and missing values | Scoring new samples against a reference cohort | Interpreting and comparing scores

Why predict Weighted Sum Scores | The inputs | Example data | Choosing a normalization | method = "project" (default) | method = "self" | Which to use | Predicting module scores | Reading the scores | Intended use and limits